Ok, thanks for the help chris!

I'm in the process of moving, so I was really beat last night
I'll try out the stuff you suggested, I'm looking forward to being able to play through the whole thing

And btw, my warning screen is messed up the first time I boot too. I was worried at first, because I couldn't get it to boot without corrupt graphics (although that's happened every time I've gotten a new cart until I cleaned them), and even after I got it running, it still had the corrupt warning. No biggie as long as the rest of the game works, and it only does it the first time it runs through.
Can anyone else confirm the bit about MS5 only working in one slot boards? I heard this from an old arcade tech whom I have a very high regard for; he knows everything there is to know about repairing monitors and other game repairs. I'm inclined to believe him, but I just haven't heard it repeated anywhere else.